Deep MRI Synthesis Collection

Overview

This is the official collection of deep learnning based MRI synthesis methods. Included a various range of MRI modalities including T1 weighted MRI, diffusion weighted MRI (dMRI), Diffusion Tensor Image (DTI), and Diffusion Fiber Orientation Distribution (FOD).

overview

Our Works

  • High Angular Diffusion Tensor Imaging Estimation from Minimal Evenly Distributed Diffusion Gradient Directions

       [Publication]                    [Code]

  • TW-BAG: Tensor-wise Brain-aware Gate Network for Inpainting Disrupted Diffusion Tensor Imaging (DICTA2022)

    Zihao Tang*, Xinyi Wang*, Lihaowen Zhu, Mariano Cabezas, Dongnan Liu, Michael Barnett, Weidong Cai, and Chenyu Wang.

       [Publication]                    [Code]

  • Diffusion MRI Fibre Orientation Distribution Inpainting (MICCAI2022 CDMRI Workshop)

    Zihao Tang*, Xinyi Wang*, Mariano Cabezas, Arkiev D’Souza, Fernando Calamante, Dongnan Liu, Michael Barnett, Chenyu Wang, and Weidong Cai.

       [Publication]                    [Code]

  • LG-Net: Lesion Gate Network for Multiple Sclerosis Lesion Inpainting (MICCAI2021)

    Zihao Tang, Mariano Cabezas, Dongnan Liu, Michael Barnett, Weidong Cai, and Chenyu Wang.

       [Publication]                    [Code]

  • Highlights

    OCE-Net (Diffusion MRI Fibre Orientation Distribution Inpainting)

    • Present a Order-wise Coefficient Estimation Network to inpaint the disrupted Fibre Orientation Distribution (FOD) coefficients.
    • Order-wise Coefficient Decoders to decode the coefficient independently.
    • Explore the analysis on connectome.

    LG-Net

    • Present an end-to-end solution for Multiple Sclerosis (MS) lesion inpainting on T1 MRI images.
    • A specifically designed lesion gate consistency.
    • State-of-the-art on computer vision similaritiy metrics and brain tissue volumetric metrics.

    BibTeX

    If you find our data or project useful in your research, please cite:
    @inproceedings{tang2021lg,
        title="LG-Net: Lesion Gate Network for Multiple Sclerosis Lesion Inpainting",
        author="Tang, Zihao and Cabezas, Mariano and Liu, Dongnan and Barnett, Michael and Cai, Weidong and Wang, Chenyu",
        booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)},
        pages="660--669",
        year={2021},
        organization={Springer}
    }
                    

    Acknowledgments

    The website template was borrowed from Chaoyi Zhang.